Episuite

Welcome to Episuite. Episuite is a suite of tools for epidemiology in Python.

Note

Episuite is currently under development, and accepting contributions. The API might change in early development stages.

Contents:

• Installation
• Changelog
  • Release v.0.3.0 (29 Mar 2021)
  • Release v.0.2.0 (21 Mar 2021)
  • Release v.0.1.0 (14 Mar 2021)
• Getting Started
  • Durations
    • Load the sample data
    • Build the durations object
    • Data visualization
  • ICU - Admissions
    • Load the sample data and aggregate by day
    • Build the admissions object
    • Check for data consistency
    • Visualization
  • Distributions
    • Loading sample data
    • Build a bootstrap distribution
    • Sampling from the distribution
  • ICU - Simulating ICU occupation
    • Preparing admissions
    • Durations (length of stay)
    • Visualization
  • Bayesian estimation of prevalence models
    • True prevalence model
    • Apparent prevalence model
  • COVID-19 World Survey Data API
    • Available countries and regions
    • Survey dates available
    • Fetching survey results
    • Visualization
  • Mobility: Facebook Movement Range Maps
    • Load Movement Range Maps data
    • Visualization
  • Mobility: Google COVID-19 Community Mobility Reports
    • Load Google mobility data
• Episuite API
  • episuite – Main package
    • episuite.data – Data handling and samples
    • episuite.icu – Intensive Care Unit (ICU) tools
    • episuite.durations – Durations
    • episuite.distributions – Distributions
    • episuite.prevalence – Prevalence models
    • episuite.mobility – Mobility data
      • episuite.mobility.facebook – Facebook Mobility data
• Bibliography
• License

Indices and tables

• Index

• Module Index

• Search Page

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Installation