COVID-19 Analysis Repository¶
Note
My name is Christian S. Perone and I’m a Computer Scientist with BSc in Computer Science (UPF/Brazil) and a MSc in Biomedical Engineering (Polytechnique Montreal/UdeM/Canada). This website contains analysis related to the COVID-19 outbreak for Brazil and Portugal. Please read about the limitations on each modelling approach, as this is very important for you to understand what you’re looking. In case of doubt, please contact me on my personal blog or twitter. If you use something from this work, please consider citing it.
- COVID-19 Analysis for Brazil
- Brazil: country-wide analysis
- Bayesian death count modelling
- Bayesian ICU (UTI) occupancy forecasts
- 04/April – Severe Acute Respiratory Syndrome (SARS) cases in Brazil (Fiocruz)
- 07/April – Death count analysis and forecast
- 08/April – Death count analysis and forecast
- 09/April – Death count analysis and forecast
- 09/April – Death count reported by government vs notary’s offices
- 10/April – Death count analysis and forecast
- 11/April – Death count analysis and forecast
- 12/April – Death count analysis and forecast
- 13/April – Death count analysis and forecast
- 17/April – Death count analysis and forecast
- 04/May – Daily death count analysis and forecast
- 24/May – SIVEP deaths and ICUs
- State: Rio Grande do Sul (RS)
- 07/April – Mapping transmission through time
- 09/April – Mapping transmission through time
- 09/April – ICU (UTI) Occupancy Forecast for Porto Alegre/RS
- 10/April – ICU (UTI) Occupancy Forecast for Porto Alegre/RS
- 10/April – ICU (UTI) Occupancy Animation for Porto Alegre/RS
- 11/April – Age distribution of infected cases by time for Porto Alegre/RS
- 11/April – Gender distribution of infected cases by time for Porto Alegre/RS
- 11/April – Estimated instantaneous reproduction number for Rio Grande do Sul (RS)
- 12/April – What Rio Grande do Sul (RS) and Portugal have in common ?
- 12/April – Mapping transmission through time
- 12/April – ICU (UTI) Occupancy Forecast for Porto Alegre/RS
- 15/April – Regarding results from UFPel study in Brazil
- 15/April – Mapping transmission through time
- 16/April – Elderly population risk estimation
- 17/April – Age distribution of infected cases by time for Porto Alegre/RS
- 17/April – Gender distribution of infected cases by time for Porto Alegre/RS
- 21/April – High-resolution elderly population density in Rio Grande do Sul
- 23/April – Mapping transmission through time
- 25/April – Map of ICU units and confirmed cases in Rio Grande do Sul
- 26/April – High-resolution elderly population density in Passo Fundo / RS
- 03/May – ICU ocuppancy on Porto Alegre/RS and Portugal
- 05/May – Mapping transmission through time
- 24/Jun – R(t) estimation for Porto Alegre/RS
- 03/Jul – R(t) estimation for Rio Grande do Sul
- 14/Jul – R(t) estimation for Porto Alegre/RS
- 14/Jul – Heatmap for age and symptom onset
- Brazil: country-wide analysis
- 20/April – COVID-19 Time varying reproduction numbers estimation for Brazil
- Summary for the last instantaneous reproduction number estimate
- State: Acre / AC
- State: Alagoas / AL
- State: Amazonas / AM
- State: Amapá / AP
- State: Bahia / BA
- State: Ceará / CE
- State: Distrito Federal / DF
- State: Espírito Santo / ES
- State: Goiás / GO
- State: Maranhão / MA
- State: Minas Gerais / MG
- State: Mato Grosso do Sul / MS
- State: Mato Grosso / MT
- State: Pará / PA
- State: Paraíba / PB
- State: Pernambuco / PE
- State: Piauí / PI
- State: Paraná / PR
- State: Rio de Janeiro / RJ
- State: Rio Grande do Norte / RN
- State: Rondônia / RO
- State: Roraima / RR
- State: Rio Grande do Sul / RS
- State: Santa Catarina / SC
- State: Sergipe / SE
- State: São Paulo / SP
- State: Tocantins / TO
- 04/May – Symptom onset to confirmation delay estimation for states in Brazil
- Summary for the last instantaneous reproduction number estimate
- State: Alagoas / AL
- State: Amazonas / AM
- State: Bahia / BA
- State: Ceará / CE
- State: Distrito Federal / DF
- State: Espírito Santo / ES
- State: Goiás / GO
- State: Maranhão / MA
- State: Minas Gerais / MG
- State: Mato Grosso do Sul / MS
- State: Mato Grosso / MT
- State: Pará / PA
- State: Paraíba / PB
- State: Pernambuco / PE
- State: Piauí / PI
- State: Paraná / PR
- State: Rio de Janeiro / RJ
- State: Rio Grande do Norte / RN
- State: Rio Grande do Sul / RS
- State: Santa Catarina / SC
- State: Sergipe / SE
- State: São Paulo / SP
- 18/May – ICU length of stay (LOS) estimation for states in Brazil
- Summary for the ICU stay estimates
- State: Alagoas / AL
- State: Amazonas / AM
- State: Bahia / BA
- State: Ceará / CE
- State: Distrito Federal / DF
- State: Espírito Santo / ES
- State: Goiás / GO
- State: Maranhão / MA
- State: Minas Gerais / MG
- State: Pará / PA
- State: Paraíba / PB
- State: Pernambuco / PE
- State: Paraná / PR
- State: Rio de Janeiro / RJ
- State: Rio Grande do Norte / RN
- State: Rio Grande do Sul / RS
- State: Santa Catarina / SC
- State: São Paulo / SP
- 7/June – Death regression analysis for each state in Brazil
- State: Alagoas / AL
- State: Amazonas / AM
- State: Bahia / BA
- State: Ceará / CE
- State: Distrito Federal / DF
- State: Espírito Santo / ES
- State: Goiás / GO
- State: Minas Gerais / MG
- State: Pará / PA
- State: Paraíba / PB
- State: Pernambuco / PE
- State: Piauí / PI
- State: Paraná / PR
- State: Rio de Janeiro / RJ
- State: Rio Grande do Norte / RN
- State: Rio Grande do Sul / RS
- State: Santa Catarina / SC
- State: São Paulo / SP
- 18/May – Symptom regression for each state in Brazil
- State: Alagoas / AL
- State: Amazonas / AM
- State: Bahia / BA
- State: Ceará / CE
- State: Distrito Federal / DF
- State: Espírito Santo / ES
- State: Goiás / GO
- State: Maranhão / MA
- State: Minas Gerais / MG
- State: Mato Grosso / MT
- State: Pará / PA
- State: Paraíba / PB
- State: Pernambuco / PE
- State: Piauí / PI
- State: Paraná / PR
- State: Rio de Janeiro / RJ
- State: Rio Grande do Norte / RN
- State: Rio Grande do Sul / RS
- State: Santa Catarina / SC
- State: Sergipe / SE
- State: São Paulo / SP
- COVID-19 Analysis for Portugal
- 08/November – COVID-19 Time varying reproduction numbers estimation for Portugal
- Summary for the last instantaneous reproduction number estimate
- Region: Alentejo
- Region: Algarve
- Region: Centro
- Region: Norte
- Region: Rlvt
- Mobility region: Aveiro District
- Mobility region: Azores
- Mobility region: Beja District
- Mobility region: Braga
- Mobility region: Bragança District
- Mobility region: Castelo Branco District
- Mobility region: Coimbra District
- Mobility region: Évora District
- Mobility region: Faro District
- Mobility region: Guarda District
- Mobility region: Leiria District
- Mobility region: Lisbon
- Mobility region: Madeira
- Mobility region: Portalegre District
- Mobility region: Porto District
- Mobility region: Santarém District
- Mobility region: Setubal
- Mobility region: Viana do Castelo District
- Mobility region: Vila Real District
- Mobility region: Viseu District